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Reaction List for pathway IP3-3K (Pathway Number 162) |
| Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated. Kd for higher order reactions is not considered. |
|   | Name | Kf | Kb | Kd | tau | Substrate | Product |
| 1 | 3K*-bind-CaM | 49.9998 (uM^-1 s^-1) | 0.1 (s^-1) | Kd(bf) = 0.002(uM) | - | IP3_3K* CaM-Ca4 | IP3_3K_CaM* |
| Communi et al, EMBO J 16; 1997 phosphorylated 3kinase has 25 fold greater sensitivity to CaM binding than the non-phosphorylated enzyme (Kd of 2nM) | |||||||
| 2 | 3K-bind-CaM | 19.2312 (uM^-1 s^-1) | 1 (s^-1) | Kd(bf) = 0.052(uM) | - | IP3_3K CaM-Ca4 | IP3_3K_CaM |
| Communi et al, EMBO J 16; 1997 non-phosphorylated 3kinase with low sensitivity to CaM binding (Kd = 52nM) | |||||||
| 3 | 3k-CaM*-off | 45 (s^-1) | 0.4148 (uM^-1 s^-1) | Kd(cb) = 0.0092(uM) | - | cmplx | IP4(1345) IP3_3K_CaM* |
| Kf = Vmax for enzyme (Communi et al, EMBO J 16(8)) Vmax is such that enzyme activity is 9 fold above basal. Kb derived from Keq value when reaction free energy = -10 kJ/mol | |||||||
| 4 | 3k-CaM*-on | 80.358 (uM^-1 s^-1) | 180 (s^-1) | Kd(bf) = 2.24(uM) | - | IP3(145) IP3_3K_CaM* | cmplx |
| Rates from Km of enzyme Communi et al, EMBO J 16(8) | |||||||
| 5 | 3k-CaM-off | 10.5 (s^-1) | 0.0968 (uM^-1 s^-1) | Kd(cb) = 0.0092(uM) | - | 3kCaM_ip3_cmplx | IP4(1345) IP3_3K_CaM |
| Kf = Vmax for enzyme: Erneux et al, Biochem 214; 1993 Enzyme is 2-2.5 fold more active than basal enzyme. Kb derived from equilibrium conditions for dG = -10 kJ/mol | |||||||
| 6 | 3k-CaM-on | 18.7497 (uM^-1 s^-1) | 42.001 (s^-1) | Kd(bf) = 2.2401(uM) | - | IP3_3K_CaM IP3(145) | 3kCaM_ip3_cmplx |
| rates from Km for enzyme: Erneux et al, Biochem 214; 1993 Enzyme is 2-2.5 fold more active than ip3-3k, but Km is doubled. | |||||||
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