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Result: 21 - 34 of 34 rows are displayed Previous of 2  Next

Pathway List for CamKII

Default ordering is done according to Pathway Name.Table header can be used for changing the default ordering.
indicates that ordering is done according to ascending or descending order.
Entries are color tagged depending on Network  or Pathway 
Pathway in which CamKII acting as a molecule or reaction or enzyme are listed here. #19#1#19#19#1#19#19#19#1#2#2#3#3#3
  Pathway Name
Pathway No.		Accession Name
Accession No.		Accession
Type		Pathway statisticsCamKII statisticsSource
Entry Date
21 CaMKII
Pathway No. 264		 CaMKII_model3

Accession No. 63		NetworkMolecule = 8
Enzyme   = 4
Reaction  = 2
Molecule = 7
Enzyme   = 4
Reaction  = 1
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19 00:00:00
   Related Pathway: 
13, 26, 80, 106, 121, 145, 159, 174, 202, 216, 235, 245, 258, 272, 282, 322, 339, 357
    Main reference here is the review by Hanson and Schulman, Ann Rev Biochem 1992 vol 61 pp 559-601. Most of the mechanistic details and a few constants are derived from there. Many kinetics are from Hanson and Schulman JBC 267:24 17216-17224 1992. The enzs look a terrible mess. Actually it is just 3 reactions for diff sites, by 4 states of CaMKII, defined by the phosph state.
   
This pathway is part of accession 63 and is completely specified in the file acc63.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc63.g   
MATLAB format    acc63.m   
SBML format    acc63.xml   
22 
  • Shared_Object_
    CaMKII_model3
    Pathway No. 263
    		•  CaMKII_model3

    Accession No. 63    		NetworkMolecule = 36
    Enzyme   = 30
    Reaction  = 14
    		Molecule = 14
    Enzyme   = 3
    Reaction  = 4
    		Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
    2005-07-19 00:00:00
       Related Pathway: ------
        This is the complete model of CaMKII bistability, model 3. It exhibits bistability in CaMKII activation due to autophosphorylation at the PSD and local saturation of PP1. This version of model 3 includes PKA regulatory input. This has little effect on the deterministic calculations, but the PKA pathway introduces a lot of noise which causes a difference in stochastic runs.
       
    This pathway is part of accession 63 and is completely specified in the file acc63.g.
    There is no separate files for just this pathway.
    FormatFile
    Native Format (GENESIS format)    acc63.g   
    MATLAB format    acc63.m   
    SBML format    acc63.xml   
    23 CaMKII
    Pathway No. 272    		 AMPAR_CaMKII_
    strong_coupling
    Accession No. 64    		NetworkMolecule = 8
    Enzyme   = 4
    Reaction  = 2
    		Molecule = 7
    Enzyme   = 4
    Reaction  = 1
    		Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
    2005-07-19 00:00:00
       Related Pathway: 
    13, 26, 80, 106, 121, 145, 159, 174, 202, 216, 235, 245, 258, 264, 282, 322, 339, 357
        Main reference here is the review by Hanson and Schulman, Ann Rev Biochem 1992 vol 61 pp 559-601. Most of the mechanistic details and a few constants are derived from there. Many kinetics are from Hanson and Schulman JBC 267:24 17216-17224 1992. The enzs look a terrible mess. Actually it is just 3 reactions for diff sites, by 4 states of CaMKII, defined by the phosph state.
       
    This pathway is part of accession 64 and is completely specified in the file acc64.g.
    There is no separate files for just this pathway.
    FormatFile
    Native Format (GENESIS format)    acc64.g   
    MATLAB format    acc64.m   
    SBML format    acc64.xml   
    24 CaMKII
    Pathway No. 282    		 AMPAR_CaMKII_
    weak_coupling
    Accession No. 65    		NetworkMolecule = 11
    Enzyme   = 4
    Reaction  = 2
    		Molecule = 10
    Enzyme   = 4
    Reaction  = 1
    		Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
    2005-07-21 00:00:00
       Related Pathway: 
    13, 26, 80, 106, 121, 145, 159, 174, 202, 216, 235, 245, 258, 264, 272, 322, 339, 357
        Main reference here is the review by Hanson and Schulman, Ann Rev Biochem 1992 vol 61 pp 559-601. Most of the mechanistic details and a few constants are derived from there. Many kinetics are from Hanson and Schulman JBC 267:24 17216-17224 1992. The enzs look a terrible mess. Actually it is just 3 reactions for diff sites, by 4 states of CaMKII, defined by the phosph state.
       
    This pathway is part of accession 65 and is completely specified in the file acc65.g.
    There is no separate files for just this pathway.
    FormatFile
    Native Format (GENESIS format)    acc65.g   
    MATLAB format    acc65.m   
    SBML format    acc65.xml   
    25 PP1_CaMKII_PSD
    Pathway No. 291    		 AMPAR_CaMKII_
    weak_coupling
    Accession No. 65    		NetworkMolecule = 1
    Enzyme   = 5
    Reaction  = 0
    		Molecule = 1
    Enzyme   = 5
    Reaction  = 0
    		Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
    2005-07-21 00:00:00
       Related Pathway: ------
        This is a model of weak coupling between the AMPAR traffikcing bistability, and the CaMKII autophosphorylation bistability. In this model, there are three stable states: Both off, AMPAR on, or both on. The fourth possible state: CaMKII on but AMPAR off, is not truly stable, since over the course of hours the AMPAR also turns on.
       
    This pathway is part of accession 65 and is completely specified in the file acc65.g.
    There is no separate files for just this pathway.
    FormatFile
    Native Format (GENESIS format)    acc65.g   
    MATLAB format    acc65.m   
    SBML format    acc65.xml   
    26 CaMKII
    Pathway No. 322    		 Ajay_Bhalla_
    2004_PKM_Tuning
    Accession No. 76    		NetworkMolecule = 8
    Enzyme   = 4
    Reaction  = 3
    		Molecule = 7
    Enzyme   = 4
    Reaction  = 1
    		Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. ( Peer-reviewed publication )/
    2006-12-12 00:00:00
       Related Pathway: 
    13, 26, 80, 106, 121, 145, 159, 174, 202, 216, 235, 245, 258, 264, 272, 282, 339, 357
        Main reference here is the review by Hanson and Schulman, Ann Rev Biochem 1992 vol 61 pp 559-601. Most of the mechanistic details and a few constants are derived from there. Many kinetics are from Hanson and Schulman JBC 267:24 17216-17224 1992. The enzs look a terrible mess. Actually it is just 3 reactions for diff sites, by 4 states of CaMKII, defined by the phosph state.
       
    This pathway is part of accession 76 and is completely specified in the file acc76.g.
    There is no separate files for just this pathway.
    FormatFile
    Native Format (GENESIS format)    acc76.g   
    MATLAB format    acc76.m   
    SBML format    acc76.xml   
    27 CaMKII
    Pathway No. 339    		 Ajay_Bhalla_
    2004_PKM_MKP3_
    Tuning
    Accession No. 77    		NetworkMolecule = 8
    Enzyme   = 4
    Reaction  = 3
    		Molecule = 7
    Enzyme   = 4
    Reaction  = 1
    		Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80 ( Peer-reviewed publication )/
    2006-12-12 00:00:00
       Related Pathway: 
    13, 26, 80, 106, 121, 145, 159, 174, 202, 216, 235, 245, 258, 264, 272, 282, 322, 357
        Main reference here is the review by Hanson and Schulman, Ann Rev Biochem 1992 vol 61 pp 559-601. Most of the mechanistic details and a few constants are derived from there. Many kinetics are from Hanson and Schulman JBC 267:24 17216-17224 1992. The enzs look a terrible mess. Actually it is just 3 reactions for diff sites, by 4 states of CaMKII, defined by the phosph state.
       
    This pathway is part of accession 77 and is completely specified in the file acc77.g.
    There is no separate files for just this pathway.
    FormatFile
    Native Format (GENESIS format)    acc77.g   
    MATLAB format    acc77.m   
    SBML format    acc77.xml   
    28 CaMKII
    Pathway No. 357    		 Ajay_Bhalla_
    2004_Feedback_
    Tuning
    Accession No. 78    		NetworkMolecule = 8
    Enzyme   = 4
    Reaction  = 3
    		Molecule = 7
    Enzyme   = 4
    Reaction  = 1
    		Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. ( Peer-reviewed publication )/
    2006-12-12 00:00:00
       Related Pathway: 
    13, 26, 80, 106, 121, 145, 159, 174, 202, 216, 235, 245, 258, 264, 272, 282, 322, 339
        Main reference here is the review by Hanson and Schulman, Ann Rev Biochem 1992 vol 61 pp 559-601. Most of the mechanistic details and a few constants are derived from there. Many kinetics are from Hanson and Schulman JBC 267:24 17216-17224 1992. The enzs look a terrible mess. Actually it is just 3 reactions for diff sites, by 4 states of CaMKII, defined by the phosph state.
       
    This pathway is part of accession 78 and is completely specified in the file acc78.g.
    There is no separate files for just this pathway.
    FormatFile
    Native Format (GENESIS format)    acc78.g   
    MATLAB format    acc78.m   
    SBML format    acc78.xml   
    29 bcm
    Pathway No. 1118    		 BCM

    Accession No. 96    		PathwayMolecule = 9
    Enzyme   = 2
    Reaction  = 4
    		Molecule = 2
    Enzyme   = 1
    Reaction  = 1
    		Bhalla PLoS Comput Biol 2021 (peer reviewed publication)/
    2022-05-19 00:00:00
       Related Pathway: ------
        Mass-action model for generating Bienenstock-Cooper-Munro (BCM) rule for synaptic plasticity
       
    This pathway is part of accession 96 and is completely specified in the file acc96.g.
    There is no separate files for just this pathway.
    FormatFile
    Native Format (GENESIS format)    acc96.g   
    SBML format    acc96.xml   
    HillTau format    acc96.json   
    30 CaMKII_g
    Pathway No. 1138    		 bcm

    Accession No. 107    		PathwayMolecule = 2
    Enzyme   = 0
    Reaction  = 0
    		Molecule = 2
    Enzyme   = 0
    Reaction  = 0
    		Bhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621./
    2022-09-30 23:36:25
       Related Pathway: 
    1142
        This model was used to generate Fig 3 C, D ,E, Fig 6,Fig7 supp C in Bhalla US. HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.
       
    This pathway is part of accession 107 and is completely specified in the file acc107.g.
    There is no separate file for just this pathway.
    FormatFile
    HillTau format    acc107.json   
    31 CaMKII_g
    Pathway No. 1142    		 bcm_bistable

    Accession No. 108    		PathwayMolecule = 4
    Enzyme   = 0
    Reaction  = 0
    		Molecule = 3
    Enzyme   = 0
    Reaction  = 0
    		Bhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
    2022-09-30 23:49:58
       Related Pathway: 
    1138
        This model was used to generate Fig 3 G in Bhalla US. HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.
       
    This pathway is part of accession 108 and is completely specified in the file acc108.g.
    There is no separate file for just this pathway.
    FormatFile
    HillTau format    acc108.json   
    32 CaMKIII_g
    Pathway No. 1145    		 syn_prot_
    composite
    Accession No. 109    		PathwayMolecule = 2
    Enzyme   = 0
    Reaction  = 0
    		Molecule = 2
    Enzyme   = 0
    Reaction  = 0
    		Bhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
    2022-09-30 23:58:38
       Related Pathway: 
    1151, 1159
        This model was used to generate fig 5 D to k, fig 6 in Bhalla US. HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.
       
    This pathway is part of accession 109 and is completely specified in the file acc109.g.
    There is no separate file for just this pathway.
    FormatFile
    HillTau format    acc109.json   
    33 CaMKIII_g
    Pathway No. 1151    		 aut6

    Accession No. 110    		PathwayMolecule = 3
    Enzyme   = 0
    Reaction  = 0
    		Molecule = 3
    Enzyme   = 0
    Reaction  = 0
    		Bhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
    2022-10-01 00:02:13
       Related Pathway: 
    1145, 1159
        This model was used to generate Fig 6 in Bhalla US. HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.
       
    This pathway is part of accession 110 and is completely specified in the file acc110.g.
    There is no separate file for just this pathway.
    FormatFile
    HillTau format    acc110.json   
    34 CaMKIII_g
    Pathway No. 1159    		 syn_CaMKIII

    Accession No. 114    		PathwayMolecule = 2
    Enzyme   = 0
    Reaction  = 0
    		Molecule = 2
    Enzyme   = 0
    Reaction  = 0
    		Bhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
    2022-10-01 00:12:23
       Related Pathway: 
    1145, 1151
        This model was used to generate Fig 3 supp A to F in Bhalla US. HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.
       
    This pathway is part of accession 114 and is completely specified in the file acc114.g.
    There is no separate file for just this pathway.
    FormatFile
    HillTau format    acc114.json   
     
    Result: 21 - 34 of 34 rows are displayed Previous of 2  Next


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