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Molecule Parameter List for Ca.PLC_g | The statistics table lists the distribution of a molecule acting either as a substrate, product, enzyme or as a molecule within the network. The text color of a molecule is highlighted by color. | Statistics | Accession and Pathway Details | |
Accession Name | Accession No. | Accession Type | Pathway Link | fig2_egfr | 1 | Network | Shared_Object_fig2_egfr, PKC, PLA2, PLCbeta, Gq, MAPK, Ras, EGFR, Sos, PLC_g, CaRegulation | This network was used to generate figure 2 in Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. It consists of the MAPK cascade in a feedback loop with PKC, and receives input from the EGFR in the synapse. Demonstration script files for generating the figures in the paper, including figure 2, are available here. |
Ca.PLC_g acting as a Molecule in fig2_egfr Network
Name | Accession Name | Pathway Name | Initial Conc. (uM) | Volume (fL) | Buffered | Ca.PLC_g | fig2_egfr Accession No. : 1 | PLC_g Pathway No. : 10 | 0 | 1000 | No | |
Ca.PLC_g acting as an Enzyme in fig2_egfr Network
Enzyme Molecule / Enzyme Activity | Accession Name | Pathway Name | Km (uM) | kcat (s^-1) | Ratio | Enzyme Type | Reagents | Ca.PLC_g / PIP2_hydrolysis
| fig2_egfr Accession No. : 1 | PLC_g Pathway No. : 10 | 97.2222 | 14 | 4 | Classical Michaelis-Menten V = Etot.S.Kcat/Km+S | Substrate PIP2
Product DAG IP3
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Ca.PLC_g acting as a Substrate for an Enzyme in fig2_egfr Network
Enzyme Molecule / Enzyme Activity | Accession Name | Pathway Name | Km (uM) | kcat (s^-1) | Ratio | Enzyme Type | Reagents | L.EGFR / phosph_PLC_g | fig2_egfr Accession No. : 1 | EGFR Pathway No. : 8 | 0.333333 | 0.2 | 4 | explicit E-S complex | Substrate Ca.PLC_g
Product Ca.PLC_g*
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Ca.PLC_g acting as a Product in a reaction in fig2_egfr Network
Kd is calculated only for second order reactions, like nA+nB <->nC or nA<->nC+nD, where n is number and A,B,C,D are molecules, where as for first order reactions Keq is calculated.
Kd for higher order reaction are not consider. |
| Name | Accession Name | Pathway Name | Kf | Kb | Kd | tau | Reagents | 1 | Ca_act_PLC_g | fig2_egfr Accession No. : 1 | PLC_g Pathway No. : 10 | 180 (uM^-1 s^-1) | 10 (s^-1) | Kd(bf) = 0.0556(uM) | - | Substrate Ca PLC_g
Product Ca.PLC_g
| 2 | dephosph_PLC_g | fig2_egfr Accession No. : 1 | PLC_g Pathway No. : 10 | 0.05 (s^-1) | 0 (s^-1) | - | - | Substrate Ca.PLC_g*
Product Ca.PLC_g
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| Database compilation and code copyright (C) 2022, Upinder S. Bhalla and NCBS/TIFR This Copyright is applied to ensure that the contents of this database remain freely available. Please see FAQ for details. |
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