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Accession
No.		NameSource /
Entry Date		Species /
Tissue		Cell CompartmentMethodology /
Model Implementation
84
  • Ajay_Bhalla_
    2007_ReacDiff3
    		• Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87 /
     2006-12-08 00:00:00    		Rat /
    Hippocampal CA1    		DendriteSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    88S6KJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12 00:00:00    		General Mammalian /
    HEK293 cells    		Surface, CytosolQualitative /
    Exact GENESIS implementation
    86BDNF_ReceptorJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12 00:00:00    		General Mammalian /
    NIH 3T3 Expression    		Surface, CytosolQualitative /
    Exact GENESIS implementation
    32
  • Osc_Ca_
    IP3metabolism
    		•  Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
     2002-04-03 00:00:00    		Generic mammalian /
    Brain - Neuronal    		CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    4
  • mkp1_feedback_
    effects
    		• Bhalla US et al. Science (2002) 297(5583):1018-23. ( peer-reviewed publication ) /
     2001-11-07 00:00:00    		Generic mammalian /
    NIH 3T3 Expression    		Surface - nucleusQuantitative match to experiments /
    Exact GENESIS implementation
    83d_fold_modelBhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
     2001-11-08 00:00:00    		Generic mammalian /
    NIH 3T3 Expression    		Surface - NucleusQuantitative match to experiments /
    Exact GENESIS implementation
    9
  • MAPK_MKP1_
    oscillation
    		• Bhalla US, Iyengar R. Chaos (2001) 11(1):221-226. ( peer-reviewed publication ) /
     2001-11-08 00:00:00    		Generic mammalian /
    NIH 3T3 Expression    		Surface - NucleusQualitative /
    Exact GENESIS implementation
    11NOS_IwanagaIn-house. /
     2001-11-12 00:00:00    		Rat; Mammalian /
    Neuronal; Expression in E.coli    		CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    13PLCbeta1In-house  /
     2001-11-12 00:00:00    		Bovine; Mammalian /
    Brain - Neuronal; expressed in E.coli    		Cell MembraneQualitative /
    Exact GENESIS implementation
    3fig4_synapseBhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
     2001-11-07 00:00:00    		Generic mammalian /
    Neuronal    		SynapseQuantitative match to experiments, Qualitative, Hypothetical /
    Exact GENESIS implementation
    16
  • Synaptic_
    Network
    		• Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
     2001-12-12 00:00:00    		Generic mammalian /
    Neuronal    		SynapseQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    18Kuroda_GCKuroda S. et al. J Neurosci. (2001) 21(15):5693-702. ( peer-reviewed publication ) /
     2001-12-24 00:00:00    		Generic mammalian /
    Neuronal    		SynapseQuantitative match to experiments /
    Exact GENESIS implementation
    1fig2_egfrBhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
     2001-11-07 00:00:00    		Generic mammalian /
    Brain    		Surface - NucleusQuantitative match to experiments, Hypothetical /
    Exact GENESIS implementation
    20
  • NOS_Phosph_
    regulation
    		• In-house /
     2001-12-25 00:00:00    		rat; Mammalian /
    Brain - Neuronal; expressed in E.coli    		CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    25cAMP_pathwayBhalla US Methods Enzymol. 2002;345:3-23). ( peer-reviewed publication ) /
     2002-01-12 00:00:00    		Generic mammalian /
    Brain - Neuronal    		Cell membrane + CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    26PKC_turnoverIn-house  /
     2002-01-22 00:00:00    		Generic mammalian /
    Brain - Neuronal    		Cell membrane +CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    28
  • CO_activation_
    of_GC
    		• In-house  /
     2002-01-22 00:00:00    		Bovine /
    Lungs    		CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    31
  • NonOsc_Ca_
    IP3metabolism
    		•  Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
     2002-04-03 00:00:00    		Generic mammalian /
    Brain - Neuronal    		CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    34cGMP_regulationIn-house  /
     2002-08-27 00:00:00    		Bovine and Sprague-Dawley rats; mammalian /
    Pulmonary, cardiac and expressed in Baculovirus infected Sf21(Spodoptera frugiperda) insect cells    		CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    48PKC_2003Bhalla US. (2004) Biophys J. 87(2):733-44 .( peer-reviewed publication ) /
     2003-04-28 00:00:00    		Generic mammalian /
    Generic    		Cytosol + Cell membraneQualitative /
    Exact GENESIS implementation
    59
  • AMPAR_traff_
    model0
    		• Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19 00:00:00    		General Mammalian /
    Neuronal    		Synaptic Spine, Postsynaptic DensityQuantitative match to experiments /
    Exact GENESIS implementation
    58EGFR_MAPKBhalla US. Biophys J. (2004) 87(2):745-53. ( peer-reviewed publication ) /
     2004-01-14 00:00:00    		Generic mammalian /
    Neuronal    		SynapseQualitative /
    Exact GENESIS implementation
    60
  • AMPAR_traff_
    model1
    		• Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19 00:00:00    		General Mammalian /
    Neuronal    		Synaptic Spine, Postsynaptic DensityQuantitative match to experiments /
    Exact GENESIS implementation
    50
  • MAPK_network_
    2003
    		• Bhalla US Biophys J. 2004 Aug;87(2):745-53. ( peer-reviewed publication ) /
     2003-04-28 00:00:00    		Generic mammalian /
    Brain - Neuronal    		SynapseQualitative /
    Exact GENESIS implementation
    49CaMKII_2003Bhalla US. Biophys J. 2004 Aug;87(2):733-44. ( peer-reviewed publication ). /
     2003-04-28 00:00:00    		Generic mammalian /
    Brain - Neuronal    		SynapseQualitative /
    Exact GENESIS implementation
    35
  • MAPK-bistability
    -fig1c
    		• Bhalla US et al. Science (2002) 297(5583):1018-23 ( peer-reviewed publication ). /
     2002-11-07 00:00:00    		Generic mammalian /
    NIH 3T3 Expression    		Surface - NucleusQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    47PKA_2003Bhalla US. (2004) Biophys J. 87(2):733-44. ( peer-reviewed publication ) /
     2003-04-28 00:00:00    		Generic mammalian /
    Generic    		Cytosol + Cell membraneQualitative /
    Exact GENESIS implementation
    43
  • CDK2-CyclinA_
    activation_
    improved
    		• Morris MC. et al. J Biol Chem. (2002) 277(26):23847-53. ( peer-reviewed publication ) /
     2003-01-11 00:00:00    		Human, Xenopus /
    Expressed in E.coli    		CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    42
  • CDK2-CyclinA_
    activation_
    pathway
    		• Morris MC. et al. J Biol Chem. (2002) 277(26):23847-53. ( peer-reviewed publication ) /
     2003-01-11 00:00:00    		Human, Xenopus /
    Expressed in E.coli    		CytosolQualitative /
    Exact GENESIS implementation
    37SERCA Mahaney JE. et al. Biophys J. (2000) 78(3) 1306-23. ( peer-reviewed publication ) /
     2002-12-31 00:00:00    		Canine /
    Cardiac; expressed in Baculovirus infected Sf21(Spodoptera frugiperda) insect cells.    		MicrosomesQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    90CaMKIIIJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12 00:00:00    		General Mammalian /
    Brain    		Surface, Cytosol, NucleusQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation,Approximate implementation
    104fb_inhibBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 22:16:21    		Generic /
    		cytosolAbstract phenomenological model /
    HillTau implementation
    105kholodenkoBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 22:18:08    		Xenopus /
    Oocyte extract    		cytosolFit to ODE model and experiments /
    HillTau implementation
    106bistableBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 22:20:03    		Generic /
    		cytosolAbstract phenomenological model /
    HillTau implementation
    103gainBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 22:14:44    		Generic /
    		cytosolFit to elementary ODE model /
    HillTau implementation
    114syn_CaMKIIIBhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.  /
     2022-10-01 00:12:23    		Rodent /
    Brain    		SynapseQuantitative fit to experiments /
    HillTau implementation
    102modifierBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 22:13:03    		Generic /
    		cytosolFit to elementary ODE model /
    HillTau implementation
    107bcmBhalla US.PLoS Comput Biol 2021 Nov 29;17(11):e1009621. /
     2022-09-30 23:36:25    		Generic /
    		SynapseFit to ODE model and experiments /
    HillTau implementation
    108bcm_bistableBhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.  /
     2022-09-30 23:49:58    		Generic /
    		cytosolAbstract phenomenological model /
    HillTau implementation
    109
  • syn_prot_
    composite
    		• Bhalla US. PLoS Comput Biol 2021 Nov 29;17(11):e1009621.  /
     2022-09-30 23:58:38    		Rodent /
    Brain    		SynapseQuantitative fit to experiments /
    HillTau implementation