Accession
No. | Name | Source /
Entry Date | Species /
Tissue | Cell Compartment | Methodology /
Model Implementation |
| 1 | fig2_egfr | Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
2001-11-07 00:00:00 | Generic mammalian /
Brain | Surface - Nucleus | Quantitative match to experiments, Hypothetical /
Exact GENESIS implementation |
| 2 | fig3_CaMKII | Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
2001-11-07 00:00:00 | Generic mammalian /
Neuronal | Synapse | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 3 | fig4_synapse | Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
2001-11-07 00:00:00 | Generic mammalian /
Neuronal | Synapse | Quantitative match to experiments, Qualitative, Hypothetical /
Exact GENESIS implementation |
| 4 | mkp1_feedback_
effects | Bhalla US et al. Science (2002) 297(5583):1018-23. ( peer-reviewed publication ) /
2001-11-07 00:00:00 | Generic mammalian /
NIH 3T3 Expression | Surface - nucleus | Quantitative match to experiments /
Exact GENESIS implementation |
| 8 | 3d_fold_model | Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
2001-11-08 00:00:00 | Generic mammalian /
NIH 3T3 Expression | Surface - Nucleus | Quantitative match to experiments /
Exact GENESIS implementation |
| 9 | MAPK_MKP1_
oscillation | Bhalla US, Iyengar R. Chaos (2001) 11(1):221-226. ( peer-reviewed publication ) /
2001-11-08 00:00:00 | Generic mammalian /
NIH 3T3 Expression | Surface - Nucleus | Qualitative /
Exact GENESIS implementation |
| 11 | NOS_Iwanaga | In-house. /
2001-11-12 00:00:00 | Rat; Mammalian /
Neuronal; Expression in E.coli | Cytosol | Quantitative match to experiments /
Exact GENESIS implementation |
| 12 | Stuehr_NOS | Santolini J. et al. J Biol Chem. (2001) 276(2):1233-43. ( peer-reviewed publication ) /
2001-11-12 00:00:00 | Generic mammalian /
Neuronal ; Expressioned in E.coli | Cytosol | Quantitative match to experiments /
Approximate implementation |
| 13 | PLCbeta1 | In-house
/
2001-11-12 00:00:00 | Bovine; Mammalian /
Brain - Neuronal; expressed in E.coli | Cell Membrane | Qualitative /
Exact GENESIS implementation |
| 15 | sGC_Stone_
Marletta | Stone JR, Marletta MA. Biochemistry (1996) 35(4):1093-9. ( peer-reviewed publication ) /
2001-12-12 00:00:00 | Bovine /
Lungs | Cytosol | Quantitative match to experiments /
Mathematically equivalent |
| 16 | Synaptic_
Network | Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication ) /
2001-12-12 00:00:00 | Generic mammalian /
Neuronal | Synapse | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 18 | Kuroda_GC | Kuroda S. et al. J Neurosci. (2001) 21(15):5693-702. ( peer-reviewed publication ) /
2001-12-24 00:00:00 | Generic mammalian /
Neuronal | Synapse | Quantitative match to experiments /
Exact GENESIS implementation |
| 19 | CondorelliGC | Condorelli P, George SC. Biophys J. (2001) 80(5):2110-9). ( peer-reviewed publication /
2001-12-25 00:00:00 | Generic mammalian /
Pulmonary and vascular smooth muscle | Cytosol | Quantitative match to experiments /
Mathematically equivalent |
| 20 | NOS_Phosph_
regulation | In-house /
2001-12-25 00:00:00 | rat; Mammalian /
Brain - Neuronal; expressed in E.coli | Cytosol | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 23 | NonOsc_Ca_
IP3metabolism | Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
2002-01-07 00:00:00 | Generic mammalian /
Brain - Neuronal | Cytosol | Quantitative match to experiments, Qualitative /
Approximate implementation |
| 24 | Osc_Ca_
IP3metabolism | Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
2002-01-08 00:00:00 | Generic mammalian /
Brain - Neuronal | Cytosol | Quantitative match to experiments, Qualitative /
Approximate implementation |
| 25 | cAMP_pathway | Bhalla US Methods Enzymol. 2002;345:3-23). ( peer-reviewed publication ) /
2002-01-12 00:00:00 | Generic mammalian /
Brain - Neuronal | Cell membrane + Cytosol | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 26 | PKC_turnover | In-house
/
2002-01-22 00:00:00 | Generic mammalian /
Brain - Neuronal | Cell membrane +Cytosol | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 27 | MAPK_osc | Boris N. Kholodenko Eur J Biochem. (2000) 267(6):1583-8). ( peer-reviewed publication ) /
2002-01-22 00:00:00 | Xenopus /
Oocyte extract | Cytosol | Hypothetical /
Mathematically equivalent |
| 28 | CO_activation_
of_GC | In-house /
2002-01-22 00:00:00 | Bovine /
Lungs | Cytosol | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 29 | Kierzek_LacZ | Kierzek AM. et al. J Biol Chem. (2001) 276(11):8165-72. ( peer-reviewed publication ) /
2002-01-28 00:00:00 | E. Coli /
- | Internal | Qualitative /
Approximate implementation |
| 30 | Huang_Ferrell_
MAPK | Huang CY and Ferrell JE Jr. Proc Natl Acad Sci U S A. (1996) 93(19):10078-83 ( peer-reviewed publication ) /
2002-01-31 00:00:00 | Xenopus /
Oocytes extract | Cytosol | Quantitative match to experiments /
Approximate implementation |
| 31 | NonOsc_Ca_
IP3metabolism | Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
2002-04-03 00:00:00 | Generic mammalian /
Brain - Neuronal | Cytosol | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 32 | Osc_Ca_
IP3metabolism | Mishra J, Bhalla US. Biophys J. 2002 Sep;83(3):1298-316. ( peer-reviewed publication ) /
2002-04-03 00:00:00 | Generic mammalian /
Brain - Neuronal | Cytosol | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 33 | CaMKII | William R. Holmes J Comput Neurosci. (2000) 8(1):65-85 ( peer-reviewed publication ) /
2002-08-21 00:00:00 | Generic mammalian /
Brain - Neuronal | Synapse | Qualitative /
Approximate implementation |
| 34 | cGMP_regulation | In-house
/
2002-08-27 00:00:00 | Bovine and Sprague-Dawley rats; mammalian /
Pulmonary, cardiac and expressed in Baculovirus infected Sf21(Spodoptera frugiperda) insect cells | Cytosol | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 35 | MAPK-bistability
-fig1c | Bhalla US et al. Science (2002) 297(5583):1018-23 ( peer-reviewed publication ). /
2002-11-07 00:00:00 | Generic mammalian /
NIH 3T3 Expression | Surface - Nucleus | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 36 | luciferase | L. Yu. Brovko et al 1994, Biochemistry (Moscow) 59(2):195-201, 1994 ( peer-reviewed publication ). /
2002-12-12 00:00:00 | E. Coli /
- | Cytosol | Qualitative /
Approximate implementation |
| 37 | SERCA | Mahaney JE. et al. Biophys J. (2000) 78(3) 1306-23. ( peer-reviewed publication ) /
2002-12-31 00:00:00 | Canine /
Cardiac; expressed in Baculovirus infected Sf21(Spodoptera frugiperda) insect cells. | Microsomes | Quantitative match to experiments, Qualitative /
Exact GENESIS implementation |
| 42 | CDK2-CyclinA_
activation_
pathway | Morris MC. et al. J Biol Chem. (2002) 277(26):23847-53. ( peer-reviewed publication ) /
2003-01-11 00:00:00 | Human, Xenopus /
Expressed in E.coli | Cytosol | Qualitative /
Exact GENESIS implementation |
| 43 | CDK2-CyclinA_
activation_
improved | Morris MC. et al. J Biol Chem. (2002) 277(26):23847-53. ( peer-reviewed publication ) /
2003-01-11 00:00:00 | Human, Xenopus /
Expressed in E.coli | Cytosol | Quantitative match to experiments /
Exact GENESIS implementation |
| 44 | MAPK_Asthagiri_
no_fb | Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
2003-02-22 00:00:00 | Chinese hamster (Cricetulus griseus); mammalian /
Ovary - CHO cell line | Surface, cytosol | Quantitative match to experiments, Qualitative /
Mathematically equivalent |
| 45 | MAPK_Asthagiri_
adapt_fb | Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
2003-02-22 00:00:00 | Chinese hamster (Cricetulus griseus); mammalian /
Ovary - CHO cell line | Surface, cytosol | Quantitative match to experiments, Qualitative /
Mathematically equivalent |
| 46 | MAPK_Asthagiri_
enz_fb | Asthagiri AR and Lauffenburger DA. Biotechnol Prog. (2001) 17(2):227-39. ( peer-reviewed publication ). /
2003-02-22 00:00:00 | Chinese hamster (Cricetulus griseus); mammalian /
Ovary - CHO cell line | Surface + cytosol | Qualitative /
Approximate implementation |
| 47 | PKA_2003 | Bhalla US. (2004) Biophys J. 87(2):733-44. ( peer-reviewed publication ) /
2003-04-28 00:00:00 | Generic mammalian /
Generic | Cytosol + Cell membrane | Qualitative /
Exact GENESIS implementation |
| 48 | PKC_2003 | Bhalla US. (2004) Biophys J. 87(2):733-44 .( peer-reviewed publication ) /
2003-04-28 00:00:00 | Generic mammalian /
Generic | Cytosol + Cell membrane | Qualitative /
Exact GENESIS implementation |
| 49 | CaMKII_2003 | Bhalla US. Biophys J. 2004 Aug;87(2):733-44. ( peer-reviewed publication ). /
2003-04-28 00:00:00 | Generic mammalian /
Brain - Neuronal | Synapse | Qualitative /
Exact GENESIS implementation |
| 50 | MAPK_network_
2003 | Bhalla US Biophys J. 2004 Aug;87(2):745-53. ( peer-reviewed publication ) /
2003-04-28 00:00:00 | Generic mammalian /
Brain - Neuronal | Synapse | Qualitative /
Exact GENESIS implementation |
| 52 | EGFR_Signaling_
pathway | Quantification of Short Term Signaling by the EGFR Kholodenko et al, The J Biol Chem. , Vol 274, No. 42, Issue of October 15, pp. 30169 - 30181, 1999. ( peer-reviewed publication ) /
2003-05-17 00:00:00 | Harlan Sprague Dawley rat; mammalian /
Hepatocytes | Cell membrane + cytosol | Qualitative /
Mathematically equivalent |
| 55 | Chemotaxis | Bray et al. Mol.Biol.Cell (1993) 4(5): 469-482. ( peer-reviewed publication ) /
2003-06-10 00:00:00 | E. Coli /
- | Cell membrane + cytosol | Quantitative match to experiments /
Mathematically equivalent |
arrow indicates that ordering is done according to ascending or descending order.