| Name | Pathway No. | Accession No. | Species / Tissue | Cell Compartment |
| AMPAR | 287 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
| CaMKII | 282 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
| PP1_CaMKII_PSD | 291 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
| PP1_PSD | 286 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
Shared_Object_ AMPAR_CaMKII_ weak_coupling | 281 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
| AMPAR_memb | 290 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
| PP2B | 285 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
| AC | 289 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
| PP1 | 284 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
| PKA | 288 | 65 | General Mammalian / Neuronal | Synaptic Spine, Postsynaptic Density |
Jak-Stat_ Pathway | 293 | 66 | mouse / Liver | Cytosol, Nucleus |
| SOCS1_knockout | 294 | 67 | mouse / Liver | Nucleus , cytoplasm |
| TetR_gene | 297 | 68 | E. Coli / E.coli Expression, Transposon, Lambda phage | Cytosol |
| Lac_gene | 296 | 68 | E. Coli / E.coli Expression, Transposon, Lambda phage | Cytosol |
| Lambda-cl_gene | 295 | 68 | E. Coli / E.coli Expression, Transposon, Lambda phage | Cytosol |
| LuxI | 303 | 69 | E. Coli / E.coli Expression, Transposon Tn10, Lambda phage Expression | Cytosol, Extracellular |
| LacI_2nd_copy | 302 | 69 | E. Coli / E.coli Expression, Transposon Tn10, Lambda phage Expression | Cytosol, Extracellular |
| Lambda-cl | 301 | 69 | E. Coli / E.coli Expression, Transposon Tn10, Lambda phage Expression | Cytosol, Extracellular |
| LacI | 300 | 69 | E. Coli / E.coli Expression, Transposon Tn10, Lambda phage Expression | Cytosol, Extracellular |
Shared_Object_ Quorum_ repressilator | 298 | 69 | E. Coli / E.coli Expression, Transposon Tn10, Lambda phage Expression | Cytosol, Extracellular |
| TetR | 299 | 69 | E. Coli / E.coli Expression, Transposon Tn10, Lambda phage Expression | Cytosol, Extracellular |
| Cytoplasm | 306 | 70 | Eukaryotic system / HeLa Cells | Cytosol, Nucleus |
| Nucleus | 305 | 70 | Eukaryotic system / HeLa Cells | Cytosol, Nucleus |
Shared_Object_ RanGTPase | 304 | 70 | Eukaryotic system / HeLa Cells | Cytosol, Nucleus |
| RasGTPase | 307 | 71 | General Mammalian / E.coli Expression system | Cytosol |
| L-Arginine | 308 | 72 | Human / Kidney cell expressing the rat brain nNOS | Cytosol |
| HomoArginine | 309 | 73 | human / Kidney cell expressing the rat brain nNOS | Cytosol |
| NMArginine | 310 | 74 | human / Kidney cell expressing the rat brain nNOS | Cytosol |
| NOHArginine | 311 | 75 | human / Kidney cell expressing the rat brain nNOS | Cytosol |
| CaMKII | 322 | 76 | Rat / Hippocampal CA1 | Dendrite |
| PLCbeta | 315 | 76 | Rat / Hippocampal CA1 | Dendrite |
| PKA | 326 | 76 | Rat / Hippocampal CA1 | Dendrite |
| EGFR | 319 | 76 | Rat / Hippocampal CA1 | Dendrite |
| PLA2 | 314 | 76 | Rat / Hippocampal CA1 | Dendrite |
| PP2B | 325 | 76 | Rat / Hippocampal CA1 | Dendrite |
| Ras | 318 | 76 | Rat / Hippocampal CA1 | Dendrite |
Shared_Object_ Ajay_Bhalla_ 2004_PKM_tuning | 312 | 76 | Rat / Hippocampal CA1 | Dendrite |
| PP1 | 324 | 76 | Rat / Hippocampal CA1 | Dendrite |
| MAPK | 317 | 76 | Rat / Hippocampal CA1 | Dendrite |
| PKM | 328 | 76 | Rat / Hippocampal CA1 | Dendrite |