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Accession List

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Accession
No.
NameSource /
Entry Date
Species /
Tissue
Cell CompartmentMethodology /
Model Implementation
57ChemotaxisBray et al. Mol.Biol.Cell (1993) 4(5): 469-482. ( peer-reviewed publication ) /
 2003-06-10
E. Coli /
-
Cell membrane + cytosolQualitative /
Mathematically equivalent
58EGFR_MAPKBhalla US. Biophys J. (2004) 87(2):745-53. ( peer-reviewed publication ) /
 2004-01-14
Generic mammalian /
Neuronal
SynapseQualitative /
Exact GENESIS implementation
59
  • AMPAR_traff_
    model0
  • Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19
    General Mammalian /
    Neuronal
    Synaptic Spine, Postsynaptic DensityQuantitative match to experiments /
    Exact GENESIS implementation
    60
  • AMPAR_traff_
    model1
  • Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19
    General Mammalian /
    Neuronal
    Synaptic Spine, Postsynaptic DensityQuantitative match to experiments /
    Exact GENESIS implementation
    61
  • simple_AMPAR_
    traff_model2
  • Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19
    General Mammalian /
    Neuronal
    Postsynaptic Density, Synaptic SpineIllustrative /
    Exact GENESIS implementation
    62
  • CaMKII_noPKA_
    model3
  • Hayer A, Bhalla US PLoS PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19
    General Mammalian /
    Neuronal
    Synaptic Spine, Postsynaptic DensityQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    63CaMKII_model3Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19
    General Mammalian /
    Neuronal
    Synaptic Spine, Postsynaptic DensityQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    64
  • AMPAR_CaMKII_
    strong_coupling
  • Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-19
    General Mammalian /
    Neuronal
    Synaptic Spine, Postsynaptic DensityQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    65
  • AMPAR_CaMKII_
    weak_coupling
  • Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication ) /
     2005-07-21
    General Mammalian /
    Neuronal
    Synaptic Spine, Postsynaptic DensityQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    66
  • Jak-Stat_
    Pathway
  • Yamada S et al. FEBS Letters 2003 Jan 16;534(1-3):190-6. ( Peer-reviewed publication ) /
     2006-02-13
    mouse /
    Liver
    Cytosol, NucleusQuantitative match to experiments /
    Exact GENESIS implementation
    67SOCS1_knockoutYamada S et al. FEBS Letters 2003 Jan 16;534(1-3):190-6. ( Peer-reviewed publication ) /
     2006-02-13
    mouse /
    Liver
    Nucleus , cytoplasmQuantitative match to experiments /
    Exact GENESIS implementation
    68RepressilatorElowitz MB, Leibler S., Nature. 2000 Jan 20;403(6767):335-8. ( Peer-reviewed publication ) /
     2006-02-13
    E. Coli /
    E.coli Expression, Transposon, Lambda phage
    CytosolQualitative /
    Exact GENESIS implementation
    69
  • Quorum_
    repressilator
  • Garcia-Ojalvo J, Elowitz MB, Strogatz SH. Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10955-60.. ( Peer-reviewed publication ) /
     2006-02-14
    E. Coli /
    E.coli Expression, Transposon Tn10, Lambda phage Expression
    Cytosol, ExtracellularQualitative /
    Exact GENESIS implementation
    70RanGTPaseGorlich D et al EMBO J. 2003 Mar 3;22(5):1088-100. ( Peer-reviewed publication ) /
     2006-05-12
    Eukaryotic system /
    HeLa Cells
    Cytosol, NucleusQualitative /
    Exact GENESIS implementation
    71RasGTPasePhillips RA et al Biochemistry. 2003 Apr 8;42(13):3956-65. ( Peer-reviewed publication ) /
     2006-05-12
    General Mammalian /
    E.coli Expression system
    CytosolQualitative /
    Exact GENESIS implementation
    72L-ArginineAbu-Soud HM et al. Biochemistry. 1999 Sep 21;38(38):12446-51. ( Peer-reviewed publication ) /
     2006-08-07
    Human /
    Kidney cell expressing the rat brain nNOS
    CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    73HomoArginineAbu-Soud HM et al. Biochemistry. 1999 Sep 21;38(38):12446-51. ( Peer-reviewed publication ) /
     2006-08-07
    human /
    Kidney cell expressing the rat brain nNOS
    CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    74NMArginineAbu-Soud HM et al. Biochemistry. 1999 Sep 21;38(38):12446-51. ( Peer-reviewed publication ) /
     2006-08-07
    human /
    Kidney cell expressing the rat brain nNOS
    CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    76
  • Ajay_Bhalla_
    2004_PKM_Tuning
  • Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. ( Peer-reviewed publication ) /
     2006-12-12
    Rat /
    Hippocampal CA1
    DendriteSemi -Quantitative match to experiments /
    Exact GENESIS implementation
    77
  • Ajay_Bhalla_
    2004_PKM_MKP3_
    Tuning
  • Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80 ( Peer-reviewed publication ) /
     2006-12-12
    Rat /
    Hippocampal CA1
    DendriteSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    75NOHArginineAbu-Soud HM et al. Biochemistry. 1999 Sep 21;38(38):12446-51. ( Peer-reviewed publication ) /
     2006-08-07
    human /
    Kidney cell expressing the rat brain nNOS
    CytosolQuantitative match to experiments /
    Exact GENESIS implementation
    78
  • Ajay_Bhalla_
    2004_Feedback_
    Tuning
  • Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. ( Peer-reviewed publication ) /
     2006-12-12
    Rat /
    Hippocampal CA1
    DendritesSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    79
  • Ajay_Bhalla_
    2007_Bistable
  • Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87 /
     2006-12-08
    Rat /
    Hippocampal CA1
    DendriteSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    80
  • Ajay_Bhalla_
    2007_PKM
  • Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87 /
     2006-12-08
    Rat /
    Hippocampal CA1
    DendriteSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    81
  • Ajay_bhalla_
    2007_ReacDiff1_
    1e-12
  • Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87 /
     2006-12-08
    Rat /
    Hippocampal CA1
    DendriteSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    82
  • Ajay_Bhalla_
    2007_ReacDiff1_
    1e-13
  • Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87 /
     2006-12-08
    Rat /
    Hippocampal CA1
    DendriteSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    83
  • Ajay_Bhalla_
    2007_ReacDiff2
  • Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87 /
     2006-12-08
    Rat /
    Hippocampal CA1
    DendriteSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    84
  • Ajay_Bhalla_
    2007_ReacDiff3
  • Ajay_Bhalla_bistable_model. HFSP Journal. 2007 May;1(1):1-87 /
     2006-12-08
    Rat /
    Hippocampal CA1
    DendriteSemi-Quantitative match to experiments /
    Exact GENESIS implementation
    85
  • Mammalian_cell_
    cycle
  • Novak B,Tyson JJ. J Theor Biol. 2004 Oct 21;230(4):563-79. ( Peer-reviewed publication ) /
     2006-12-21
    General Mammalian /
    -
    NucleusQuantitative match to experiments /
    Approximate implementation
    86BDNF_ReceptorJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12
    General Mammalian /
    NIH 3T3 Expression
    Surface, CytosolQualitative /
    Exact GENESIS implementation
    87AKTJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12
    General Mammalian /
    Brain
    Surface, CytosolQualitative /
    Exact GENESIS implementation
    88S6KJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12
    General Mammalian /
    HEK293 cells
    Surface, CytosolQualitative /
    Exact GENESIS implementation
    894EBPJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12
    General Mammalian /
    E.coli Expression
    Surface, CytosolQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation
    90CaMKIIIJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12
    General Mammalian /
    Brain
    Surface, Cytosol, NucleusQuantitative match to experiments, Qualitative /
    Exact GENESIS implementation,Approximate implementation
    91
  • Protein_
    synthesis
  • Jain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-12
    General Mammalian /
    -
    Cell membrane, CytosolQuantitative match to experiments, Hypothetical /
    Exact GENESIS implementation
    92mTOR_pathwayJain P, and Bhalla, U.S. PLoS Comput Biol. 2009 Feb;5(2). ( Peer-reviewed publication ) /
     2009-02-13
    General Mammalian /
    Neuronal
    DendriticQuantitative match to experiments /
    Approximate implementation
    93CaMKIV_submodelPeer-reviewed publication /
     2014-06-10
    General Mammalian /
    Neuronal
    Cytosol, NucleusQuantitative match to experiments /
    Exact GENESIS implementation
    94mRNA synthesisPeer-reviewed publication,Book /
     2014-06-10
    General Mammalian/Neuronal /
    Neuronal
    Surface,Cytosol, NucleusQuantitative match to experiments,Approximate implementation,Qualitative,Qualitative /
    Approximate implementation
    95
  • Differential syn
    thesis of mRNA
  • Peer-reviewed publication,Book /
     2014-06-10
    General Mammalian/Neuronal /
    Neuronal
    Surface,Cytosol, NucleusQuantitative match to experiments,Approximate implementation,Qualitative,Qualitative /
    Approximate implementation

     
    Result: 41 - 79 of 79 rows are displayed Previous of 2  Next



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