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Result: 1 - 14 of 14 rows are displayed

Pathway List for pp2b

Default ordering is done according to Pathway Name.Table header can be used for changing the default ordering.
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Entries are color tagged depending on Network  or Pathway 
  Pathway Name
Pathway No.
Accession Name
Accession No.
Accession
Type
Pathway statisticspp2b statisticsSource
Entry Date
1 PP2B
Pathway No. 83
 Synaptic_
Network

Accession No. 16
NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication )/
2001-12-12
   Related Pathway: 
1629205219238248261267276285325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 16 and is completely specified in the file acc16.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc16.g   
GENESIS Format (Annotated version)    Anno_acc16.g   
2 PP2B
Pathway No. 219
 MAPK_network_
2003

Accession No. 50
NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US Biophys J. 2004 Aug;87(2):745-53. ( peer-reviewed publication )/
2003-04-28
   Related Pathway: 
162983205238248261267276285325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 50 and is completely specified in the file acc50.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc50.g   
GENESIS Format (Annotated version)    Anno_acc50.g   
MATLAB format    acc50.m   
SBML format    acc50.xml   
3 PP2B
Pathway No. 29
 fig4_synapse

Accession No. 3
NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication )/
2001-11-07
   Related Pathway: 
1683205219238248261267276285325342360
    This is the composite model of 4 kinases: PKC, MAPK, PKA and CaMKII and numerous regulatory pathways involved in synaptic signaling. From Bhalla US and Iyengar R. Science (1999) 283(5400):381-7.This model comes from figure 4 of that paper.
Demonstration script files for generating the figures in the paper, including figure 4, are available here.
   
This pathway is part of accession 3 and is completely specified in the file acc3.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc3.g   
GENESIS Format (Annotated version)    Anno_acc3.g   
4 PP2B
Pathway No. 16
 fig3_CaMKII

Accession No. 2
NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. ( peer-reviewed publication )/
2001-11-07
   Related Pathway: 
2983205219238248261267276285325342360
    This is the model file for figure 3 from Bhalla US and Iyengar R. Science (1999) 283(5400):381-7. It is a model of the Ca activation of CaMKII and other CaM-activated enzymes. It includes the regulatory phosphatases PP1 and PP2B (Calcineurin) acting on CaMKII and also includes CaM-activated adenylyl cyclase and PKA in the synapse.
Demonstration script files for generating the figures in the paper, including figure 3, are available here.
   
This pathway is part of accession 2 and is completely specified in the file acc2.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc2.g   
GENESIS Format (Annotated version)    Anno_acc2.g   
5 PP2B
Pathway No. 261
 CaMKII_noPKA_
model3

Accession No. 62
NetworkMolecule = 2
Enzyme   = 0
Reaction  = 3
Molecule = 0
Enzyme   = 0
Reaction  = 0
Hayer A, Bhalla US PLoS PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19
   Related Pathway: 
162983205219238248267276285325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 62 and is completely specified in the file acc62.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc62.g   
MATLAB format    acc62.m   
SBML format    acc62.xml   
6 PP2B
Pathway No. 267
 CaMKII_model3

Accession No. 63
NetworkMolecule = 2
Enzyme   = 0
Reaction  = 3
Molecule = 0
Enzyme   = 0
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19
   Related Pathway: 
162983205219238248261276285325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 63 and is completely specified in the file acc63.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc63.g   
MATLAB format    acc63.m   
SBML format    acc63.xml   
7 PP2B
Pathway No. 205
 CaMKII_2003

Accession No. 49
NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Bhalla US. Biophys J. 2004 Aug;87(2):733-44. ( peer-reviewed publication )./
2003-04-28
   Related Pathway: 
162983219238248261267276285325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 49 and is completely specified in the file acc49.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc49.g   
GENESIS Format (Annotated version)    Anno_acc49.g   
MATLAB format    acc49.m   
SBML format    acc49.xml   
8 PP2B
Pathway No. 248
 AMPAR_traff_
model1

Accession No. 60
NetworkMolecule = 4
Enzyme   = 40
Reaction  = 3
Molecule = 0
Enzyme   = 1
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19
   Related Pathway: 
162983205219238261267276285325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 60 and is completely specified in the file acc60.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc60.g   
MATLAB format    acc60.m   
SBML format    acc60.xml   
9 PP2B
Pathway No. 238
 AMPAR_traff_
model0

Accession No. 59
NetworkMolecule = 4
Enzyme   = 40
Reaction  = 3
Molecule = 0
Enzyme   = 1
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19
   Related Pathway: 
162983205219248261267276285325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 59 and is completely specified in the file acc59.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc59.g   
MATLAB format    acc59.m   
SBML format    acc59.xml   
10 PP2B
Pathway No. 285
 AMPAR_CaMKII_
weak_coupling

Accession No. 65
NetworkMolecule = 4
Enzyme   = 40
Reaction  = 3
Molecule = 0
Enzyme   = 1
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-21
   Related Pathway: 
162983205219238248261267276325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 65 and is completely specified in the file acc65.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc65.g   
MATLAB format    acc65.m   
SBML format    acc65.xml   
11 PP2B
Pathway No. 276
 AMPAR_CaMKII_
strong_coupling

Accession No. 64
NetworkMolecule = 2
Enzyme   = 0
Reaction  = 3
Molecule = 0
Enzyme   = 0
Reaction  = 0
Hayer A, Bhalla US PLoS Comput Biol. 2005 Jul;1(2):137-54. Epub 2005 Jul 29. ( Peer-reviewed publication )/
2005-07-19
   Related Pathway: 
162983205219238248261267285325342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 64 and is completely specified in the file acc64.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc64.g   
MATLAB format    acc64.m   
SBML format    acc64.xml   
12 PP2B
Pathway No. 325
 Ajay_Bhalla_
2004_PKM_Tuning

Accession No. 76
NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. ( Peer-reviewed publication )/
2006-12-12
   Related Pathway: 
162983205219238248261267276285342360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 76 and is completely specified in the file acc76.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc76.g   
MATLAB format    acc76.m   
SBML format    acc76.xml   
13 PP2B
Pathway No. 342
 Ajay_Bhalla_
2004_PKM_MKP3_
Tuning

Accession No. 77
NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80 ( Peer-reviewed publication )/
2006-12-12
   Related Pathway: 
162983205219238248261267276285325360
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 77 and is completely specified in the file acc77.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc77.g   
MATLAB format    acc77.m   
SBML format    acc77.xml   
14 PP2B
Pathway No. 360
 Ajay_Bhalla_
2004_Feedback_
Tuning

Accession No. 78
NetworkMolecule = 5
Enzyme   = 0
Reaction  = 5
Molecule = 0
Enzyme   = 0
Reaction  = 0
Ajay SM, Bhalla US. Eur J Neurosci. 2004 Nov;20(10):2671-80. ( Peer-reviewed publication )/
2006-12-12
   Related Pathway: 
162983205219238248261267276285325342
    Also called Calcineurin. Major sources of info: Cohen, P Ann Rev Biochem 1989 58:453-508 Mumby and Walker Physiol Rev 73:4 673-699 Stemmer and Klee Biochem 33 1994 6859-6866 Liu and Storm JBC 264:22 1989 12800-12804 This model is unusual: There is actually more expt info than I want to put in the model at this time. Phosph: Hashimoto and Soderling JBC 1989 264:28 16624-16629 (Not used)
   
This pathway is part of accession 78 and is completely specified in the file acc78.g.
There is no separate files for just this pathway.
FormatFile
Native Format (GENESIS format)    acc78.g   
MATLAB format    acc78.m   
SBML format    acc78.xml   

 
Result: 1 - 14 of 14 rows are displayed



Database compilation and code copyright (C) 2005, Upinder S. Bhalla and NCBS/TIFR
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